bioinformatics, the BLOSUM (BLOcks SUbstitution Matrix) matrix is a substitution matrix used for sequence alignment of proteins. BLOSUM matrices are used...
22 KB (2,553 words) - 08:59, 31 July 2024
evolutionary change. The BLOSUM-62 matrix is one of the best substitution matrices for detecting weak protein similarities. BLOSUM matrices with high numbers...
19 KB (2,483 words) - 14:32, 2 July 2024
Substitution matrix (section BLOSUM)
approximated by compounding small changes that occur over short time scales. The BLOSUM (BLOck SUbstitution Matrix) series of matrices rectifies this problem. Henikoff...
15 KB (2,105 words) - 07:00, 24 September 2024
that the BLOSUM matrices are much more effective. The BLOSUM series were generated by comparing a number of divergent sequences. The BLOSUM series are...
17 KB (2,564 words) - 04:35, 12 July 2024
by the BLOSUM matrices. Although both matrices produce similar scoring outcomes they were generated using differing methodologies. The BLOSUM matrices...
31 KB (4,156 words) - 21:26, 1 April 2024
together with his wife Jorja Henikoff, introduced the BLOSUM substitution matrices. The BLOSUM matrices are widely used for sequence alignment of proteins...
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scoring matrices, each with further alterations for specific scenarios: PAM BLOSUM When aligning sequences there are often gaps (i.e. indels), sometimes large...
25 KB (3,237 words) - 22:44, 16 October 2024
became a teacher at St. Friedeswiede. Blosum Pricket (ブロサム=プリケト, Burosamu Puriketo) Voiced by: Hōchū Ōtsuka Blosum Pricket is the Marquis of the town of...
27 KB (2,142 words) - 15:22, 31 May 2024
amino acids is usually more complicated than that of the bases. See PAM, BLOSUM. Gap penalty designates scores for insertion or deletion. A simple gap penalty...
36 KB (4,659 words) - 19:31, 9 October 2024
amino acid mutations. Another common series of scoring matrices, known as BLOSUM (Blocks Substitution Matrix), encodes empirically derived substitution probabilities...
56 KB (6,921 words) - 14:05, 31 October 2024