Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series...
2 KB (155 words) - 02:02, 3 December 2023
files are generated by various assembly programs, including Phrap, CAP3, Newbler, Arachne, AMOS (more specifically Minimo) and Tigr Assembler v2. ACE format...
1 KB (71 words) - 23:01, 9 February 2022
phrap, recent versions also support other sequence assembly programs like Newbler. Consed was originally developed as a contig editing and finishing tool...
2 KB (195 words) - 20:26, 10 June 2024
utilizing a variety of assembly methods (SeqPrep, KmerFreq, Quake, BWA, Newbler, ALLPATHS-LG, Atlas-Link, Atlas-GapFill, Phrap, CrossMatch, Velvet, BLAST...
19 KB (2,104 words) - 11:08, 8 July 2024
sequencing formats, and a wide range of sequence platforms are accepted. Newbler 2004 2012 Low, single-thread, high RAM requirement Specialised to accommodate...
120 KB (12,516 words) - 05:37, 20 May 2024
reads delayed development of assemblers; at the beginning in 2004 only the Newbler assembler from 454 was available. Released in mid-2007, the hybrid version...
24 KB (2,864 words) - 15:34, 19 July 2024
Canu CLC SPAdes Velvet MIRA SOAPdenovo2 SOAPdenovo-Trans Celera IDBA-UD Newbler Ray-Meta ASeMbler Alignreads Annotation is used to identify genes in the...
42 KB (4,505 words) - 18:49, 25 July 2024
29% determined through Ion Torrent Sequencing and assembled using the Newbler v. 2.8 software. M. hakonensis’s genome contains 3,357 protein coding genes...
14 KB (1,566 words) - 02:19, 3 December 2023
454 reads with Sanger reads. The 454 reads were first assemble using the Newbler assembler (which is optimized to use short reads) generating pseudo reads...
21 KB (2,951 words) - 23:35, 28 July 2024
about 88,000 Sanger BAC reads. First by using genome assembly software, Newbler, an assembly was produced with 25,912 contigs and 4,792 scaffolds from...
44 KB (4,099 words) - 20:07, 27 July 2024