operons and regulons. A total of 120 sRNAs with 231 total interactions which all together regulate 192 genes are also included. RegulonDB was founded...
6 KB (778 words) - 17:35, 15 February 2023
that is, they can respond to two different sigma factors, as reported in RegulonDB. The most common ones are those promoters that can respond to both sigma...
20 KB (2,045 words) - 23:47, 25 October 2024
predictable from the topology and logic of the gene network that is reported in RegulonDB. Specifically, on average, the response strength of a gene was predictable...
48 KB (6,095 words) - 05:33, 28 October 2024
particular, creating a model of the regulatory network of E. coli K-12. The RegulonDB database (released in 2010) makes this data available. He has also been...
6 KB (466 words) - 19:03, 16 October 2024
Center for Genomic Sciences (UNAM, Mexico), where he collaborates with the RegulonDB group. He is the initiator and team leader of the OntoGene research group...
9 KB (954 words) - 14:28, 8 March 2024
Public [5] RegTransBase Prokaryotes Expert/literature curation Public [6] RegulonDB Escherichia coli Expert curation Public [7] Archived 2017-05-07 at the...
21 KB (2,176 words) - 21:02, 17 August 2024
RegTransBase - transcription factor binding sites in a diverse set of bacteria. RegulonDB – Primary database on transcriptional regulation in Escherichia coli TRRD...
8 KB (795 words) - 23:03, 17 August 2024
issue): D98–D105. doi:10.1093/nar/gkq1110. PMC 3013702. PMID 21051347. "regulondb.ccg.unam.mx". Retrieved 14 May 2012. Bailey TL, Elkan C (1994). "Fitting...
54 KB (2,270 words) - 05:42, 29 October 2024
and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from...
70 KB (2,018 words) - 21:31, 28 March 2024
and used those position weight matrices (PSWM) provided by RegulonDB (http://regulondb.ccg.unam.mx). We built PSWM for each transcription factor from...
57 KB (2,278 words) - 06:22, 29 October 2024