A Phred quality score is a measure of the quality of the identification of the nucleobases generated by automated DNA sequencing. It was originally developed...
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FASTQ format (section Quality)
encode a Phred quality score from 0 to 93 using ASCII 33 to 126 (although in raw read data the Phred quality score rarely exceeds 60, higher scores are possible...
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Phred may refer to: Phred (software), a computer program used in molecular biology Phred quality score, a term used in molecular biology Phred (Doonesbury)...
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in scores of value 0 (even with changes), undefined, or negative (even if better than positive). Benchmark Coding theory Information theory Phred quality...
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developed, Phred produced significantly fewer errors in the data sets examined than other methods, averaging 40–50% fewer errors. Phred quality scores have...
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Sequence assembly (section Quality control)
shorter or one base longer. Read quality is typically measured by Phred which is an encoded score of each nucleotide quality within a read's sequence. Some...
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(FASTA file) and a quality file with quality scores (PHRED scores) associated with each nucleotide of each DNA sequence. The PHRED scores indicate the probability...
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and Brent Ewing of the University of Washington described their phred quality score for sequencer data analysis, a landmark analysis technique that gained...
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Phrap (section Quality based consensus sequences)
recurring thread within the Phrap algorithms is the use of Phred quality scores. Phrap used quality scores to mitigate a problem that other assembly programs...
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position (depth of coverage) Bases at that position from aligned reads Phred Quality of those bases, represented in ASCII with -33 offset (OPTIONAL) . (dot)...
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