In bioinformatics, MAFFT (multiple alignment using fast Fourier transform) is a program used to create multiple sequence alignments of amino acid or nucleotide...
18 KB (2,079 words) - 18:29, 18 September 2024
Distance matrix (section MAFFT)
their popularity: ClustalW MUSCLE MAFFT MANGO And many more Multiple alignment using fast Fourier transform (MAFFT) is a program with an algorithm based...
31 KB (4,098 words) - 07:10, 11 September 2024
high accuracy scores, MAFFT was the fastest, closely followed by Clustal Omega. Both were faster than T-Coffee, however MAFFT and Clustal Omega required...
26 KB (2,877 words) - 12:08, 29 May 2024
NIAS DNA Bank. Archived from the original on 2011-08-11. "anysymbol". MAFFT - a multiple sequence alignment program. "Alignment Fileformats". 22 May...
25 KB (2,148 words) - 16:15, 26 April 2024
Protein engineering (section MAFFT)
Protein engineering is the process of developing useful or valuable proteins through the design and production of unnatural polypeptides, often by altering...
58 KB (7,493 words) - 11:39, 18 July 2024
alignment - BLAST, Dot plots Multiple alignment - ClustalW, PROBCONS, MUSCLE, MAFFT, and T-Coffee. A common use for pairwise sequence alignment is to take a...
33 KB (3,894 words) - 07:15, 23 July 2024
progressive DNA alignments is multiple alignment using fast Fourier transform (MAFFT). Another common progressive alignment method named T-Coffee is slower than...
49 KB (6,213 words) - 12:51, 15 September 2024
Official website AliView 2021 No MUSCLE integrated; other programs such as MAFFT can be defined External programs such as FastTree can be called from within...
22 KB (183 words) - 01:41, 22 August 2023
pairwise and multiple sequence alignment algorithms including MUSCLE, Mauve, MAFFT, Clustal Omega, Jotun Hein, Wilbur-Lipman, Martinez Needleman-Wunsch, Lipman-Pearson...
69 KB (2,358 words) - 02:53, 19 August 2024
profiles, which is more specific for the sequences to be aligned. ClustalW and MAFFT adopted this kind of gap penalty determination for their multiple sequence...
19 KB (2,483 words) - 14:32, 2 July 2024