ChIP-sequencing, also known as ChIP-seq, is a method used to analyze protein interactions with DNA. ChIP-seq combines chromatin immunoprecipitation (ChIP)...
27 KB (3,353 words) - 03:17, 31 July 2024
Chromatin immunoprecipitation (redirect from ChIP)
be more efficient than ChIP-chip, ChIP-seq is not always the first choice for scientists. The cost and accessibility of ChIP-seq is a major disadvantage...
25 KB (2,929 words) - 08:17, 12 July 2024
assay. MOWChIP-seq is a special type of ChIP-seq assay designed for low-input and high-throughput assays. The overall process of MOWChIP-seq is similar...
4 KB (436 words) - 04:24, 23 September 2022
integrated package that for analysis of ChIP-Seq and RNA-Seq datasets using a web-based user-friendly GUI. For RNA-Seq Biowardrobe performs mapping, quality...
164 KB (20,376 words) - 14:18, 16 July 2024
CUT&RUN sequencing (redirect from CUT&RUN-seq)
alternative to the current standard of ChIP-seq. ChIP-Seq suffers from limitations due to the cross linking step in ChIP-Seq protocols that can promote epitope...
16 KB (2,049 words) - 03:28, 3 December 2023
at a genome-wide scale in humans. A year later, the terms “MNase-Seq” and “MNase-ChIP”, for micrococcal nuclease digestion with chromatin immunoprecipitation...
39 KB (4,420 words) - 19:10, 15 May 2024
nucleotide resolution. ATAC-seq requires no sonication or phenol-chloroform extraction like FAIRE-seq; no antibodies like ChIP-seq; and no sensitive enzymatic...
16 KB (1,726 words) - 17:22, 15 July 2024
Epigenomics (section ChIP-Chip and ChIP-Seq)
gene expression (ChIP-SAGE), PET: paired end ditag sequencing (ChIP-PET) and more recently, next-generation sequencing (ChIP-Seq). ChIP-seq follows the same...
43 KB (5,120 words) - 18:37, 28 July 2024
within any genome, which is a much higher resolution than either ChIP-chip or ChIP-seq. ChIP-exo has been shown to give up to single base pair resolution...
9 KB (1,234 words) - 08:20, 20 December 2023
enriched with aligned reads as a consequence of performing a ChIP-sequencing or MeDIP-seq experiment. These areas are those where a protein interacts with...
8 KB (970 words) - 07:51, 3 December 2023